FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7599872
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA23400.012.81487751
ACGGGAT14650.012.1328099
AAACGGG23100.012.07722957
CGGGATT14450.011.5222110
GAAACGG24850.011.4984866
AACGGGA19650.011.4501038
GGAAACG25200.010.8923765
AACGGGT5801.8189894E-129.3101178
CCCCGGC6850.09.2160781
ACGGGTT4254.022513E-88.9997819
ACCACGC15000.08.99942531
CCCCGGT3206.70756E-58.4549281
CGCTAAA2709.987509E-48.3505461
TACAGGC69050.08.24371617
CTCGACA2500.00473843568.09948332
ACAGGCG29950.08.03809518
CCCGGAT3653.539565E-58.03025151
CCCGAGT20950.07.96390961
GCCACCG17900.07.918488528
CCTCGAA4853.260593E-77.90288831
Produced by FastQC (version 0.11.5)