FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7293633
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGGG1108.638878E-414.30879414
CGTTGGA19450.013.3703311
CTAGCGA1250.00226464212.59173914
AACGGGA18100.012.2983918
ACGGGAT14550.012.05378159
AAACGGG22150.011.8767587
CGGGATT13900.011.16158810
GAAACGG23650.010.8381826
GGAAACG24650.09.9007575
CGAAACG2057.8433345E-49.87143610
CCCCGAA2751.0854408E-59.867621
CCCCGAT3002.8589056E-69.7990961
TATCGCA2403.1697616E-49.36917324
CGTTGTA1950.00549447359.2772511
GCGATAG2050.0086763728.77503125
GATTTCG8800.08.7308775
CCGGCTA6800.08.59753638
GCGCGAT3155.759533E-58.5657520
CGTGAGC16700.08.21345523
GCGTGAG16300.08.13888722
Produced by FastQC (version 0.11.5)