FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7372011
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2151.546141E-1015.69929145
GATCGGA2901.0149961E-912.4179351
CGTTGGA23900.012.3367511
AAACGGG24250.011.783127
AACGGGA19900.011.6453498
ACGGGAT15100.011.4729019
GAAACGG26100.010.94784456
CGGGATT13950.010.64459710
GGAAACG27650.010.2538735
ACGCCCG4203.0195224E-1010.17865334
AACGGGT4956.002665E-119.5451428
CGTATGC3858.484312E-89.35085143
CTCGTAT4051.8467472E-78.888941
CGCTAAA2300.0022219468.8072861
ACCGTGC7000.08.67846431
TCTCGTA3951.225997E-68.544661540
GATTTCG11550.08.3772025
CGCCCGG7350.08.26537235
ATCGGAA5453.7125574E-98.2597482
CCCGCAA2750.00121839378.1845481
Produced by FastQC (version 0.11.5)