FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9721750
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCGCG5950.013.10925130
GCGTGAG16150.012.72361522
CGTTGGA25650.012.57881
CGTGAGC18000.012.08253223
ACAGGCG20400.011.9845618
GCCACCG14000.011.7857228
ACGGGCG1059.7271695E-411.42787218
CCACCGC10800.011.38889429
AACGGGA22400.011.3831748
AAACGGG27500.011.3447017
ATAGGCG3250.011.07624518
GAAACGG27800.010.7368086
AGGCGTG21450.010.62871920
ACGGGAT16850.010.5037559
CAGGCGT19900.010.40137319
CCCAAAG83000.010.3781971
GGAAACG28100.010.3572635
CGGGATT15600.010.28777910
GAGCCAC46650.010.25697626
TACGGGC2053.7848986E-710.24327617
Produced by FastQC (version 0.11.5)