EGAF00006071417 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006071417
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4803280
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCG	18892	0.39331456837827483	TruSeq Adapter, Index 3 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2300	42.245884	45
CTCGTAT	2510	42.20321	41
TCTCGTA	2515	41.940895	40
CGTATGC	2555	41.459904	43
ATCGGAA	2680	40.827507	1
CATCTCG	2585	40.368458	38
TCGGAAG	2715	40.31652	2
ACACGTC	2715	40.003567	12
TCGTATG	2635	39.945103	42
ATCTCGT	2640	39.69783	39
CGTCTGA	2740	39.392372	15
ACGTCTG	2780	38.825573	14
GCACACG	2815	38.82213	10
CACGTCT	2820	38.274857	13
CGGAAGA	2860	38.193592	3
GTATGCC	2915	36.334724	44
CACACGT	3040	35.87481	11
CTTAGGC	3165	33.758373	32
GCATCTC	3230	32.516148	37
ACTTAGG	3340	31.720211	31