FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11814257
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA27000.012.4468651
ACGGGAT19050.012.2827859
CCCCGTT3550.012.2559031
AAACGGG30450.011.3786817
CGGGATT17150.011.36963410
AACGGGA25600.011.3665598
GATCGGA1602.261284E-611.2521881
GAAACGG31500.010.761316
ATAGGCG3600.010.41609118
GGAAACG31050.010.3860315
GCCACCG18550.010.35070828
GCGTGAG20000.010.12542622
ACAGGCG25700.010.03835518
CACCGCG6950.09.49652130
CGTGAGC21900.09.38399723
GAGCCAC56900.09.2797126
CCCAAAG92550.09.1265721
CCCTAAA30550.09.0852361
TAGGCGT3801.0913936E-119.07906119
CCCAAGT38750.08.7500881
Produced by FastQC (version 0.11.5)