FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7129151
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19300.013.2104721
AACGGGA16550.013.0455078
AAACGGG19800.012.9487357
ACGGGAT12350.012.9294229
ACCGCGC5400.012.49588431
CGGGATT11900.012.28440610
GAAACGG21650.012.1567996
CGCGCCC4600.011.73526733
GGAAACG21200.011.7059925
CACCGCG6050.011.15335330
ACGCCCG4051.2732926E-1111.10745334
CCGCGCC6350.010.98063632
CGCCCGG8250.010.90549935
CCGGCTA9300.010.39914538
CGGCTAA9050.010.18922939
CCCGTAA2453.7659763E-49.2093961
CCCGACA2504.6093078E-49.0252081
GCCCGGC16950.09.02357736
CGTGAGC19700.09.0196223
GCGTGAG18800.08.97285722
Produced by FastQC (version 0.11.5)