FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5834466
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19150.016.1427941
AACGGGA15050.015.3915078
AAACGGG19200.015.2272887
GAAACGG20200.014.8111466
GGAAACG19850.014.4352835
ACGGGAT11500.014.0804029
AACGGGT5050.012.4694438
CGGGATT10850.012.22933110
CGTTCGA1802.2856443E-411.282281
CGCCCGG6300.010.353744535
ACGGGAA7050.010.20801459
CGGGAAT6900.010.10399210
GCCACCG12800.010.01607128
CGCACCC3603.0227966E-89.99688933
CCGCACC4803.274181E-119.84068832
CGGGATA3003.0660067E-69.74546310
GTTGGAA35200.09.6794342
CCGGCTA6350.09.56305138
CGCCACC9550.09.42066827
CGAAACG1950.00559737779.2563015
Produced by FastQC (version 0.11.5)