FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10624917
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGAGC20150.011.09271823
GCGTGAG19600.010.4855522
AACGGGA19950.010.4499168
ACGGGAT14500.010.4470649
CGTTGGA23900.010.424121
ATCGGAA2752.1645974E-1010.3629712
AAACGGG24150.010.06094557
GCCACCG17500.09.85813328
CGGGATT13050.09.65405310
GAAACGG24400.09.4661166
ACAGGCG28050.09.46556918
CCCGTAT1757.3892385E-59.4337391
CACCGCG7200.09.37784130
CCCAAAG87550.09.0683581
GAGCCAC54750.09.01350326
CCCCGCA4105.456968E-128.7852991
GGAAACG25450.08.6632465
CCCGAAA3305.815309E-98.6410961
CCCAAGT35850.08.5821061
CCACCGC14150.08.48249629
Produced by FastQC (version 0.11.5)