FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7812623
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA15450.010.9813821
ACGGGAT9550.010.6652569
GATCGGA1909.832092E-710.6499791
CCCAAGT27250.010.6244251
AACGGGA13700.010.0584948
CCCAAAG65150.09.9866731
CCCTAAA19350.09.8942561
AAACGGG16350.09.8939957
GAAACGG17000.09.7800216
GGAAACG16500.09.6224945
GAGCCAC41750.09.477200526
CCCATAA15550.09.4092811
GCGTGAG14700.09.37580322
CGTGAGC15300.09.30234423
ACAGGCG20800.09.28991118
ATAGGCG2752.532579E-89.25979518
CGGGATT9200.09.11729310
CCCTATT12600.09.0180231
CCCGAGT12350.08.5703971
CGTTGGT2954.057256E-78.4422251
Produced by FastQC (version 0.11.5)