FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5836208
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT8300.012.65061959
GAAACGG14150.011.3461756
CGGGATT8600.011.33722510
AAACGGG14100.011.2766127
CGTTGGA14100.011.1905571
AACGGGA11550.011.1688478
GGAAACG14300.010.3868555
CCCAAAG41200.010.0668441
AACGGGT3552.582965E-108.8732528
ACAGGCG13150.08.55382618
CGATAAT2651.3081717E-68.506031
CGTAAGA1600.0032233968.45286751
CGAGAGT1600.0032233968.45286751
CCCGAGT8750.08.4152981
GAGCCAC27000.08.38760826
CCCAAGT16200.08.3485111
GCGTGAG9500.08.20927222
AGGCGTG11900.08.19202520
CCCAAAT24300.08.1629881
CCCGATT2251.2510897E-48.014571
Produced by FastQC (version 0.11.5)