FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9525788
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA23900.010.9858561
CCACGCG1100.001431523110.9116661
GCCACCG16150.010.77410528
CACCGCG7000.010.71433930
AAACGGG26050.010.5368737
ATAGGCG3009.094947E-1210.49944718
AACGGGA22250.010.31428058
ACGGGAT16450.010.3037339
CCCCGAT1901.5768164E-610.2655811
GAAACGG26550.010.1124616
CCCGAAT4600.09.7849181
CGGGATT15500.09.77398710
GGAAACG26450.09.6411345
GCGTGAG16050.09.4393522
ACAGGCG22250.09.43770518
CGTGAGC17000.09.26489823
CCCAAAG78150.09.1960291
AAGCGGC5300.09.0569353
AACGGGT4850.08.9687888
GAGCCAC49350.08.84516926
Produced by FastQC (version 0.11.5)