FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13571612
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA39650.013.9214731
ACGGGAT24150.013.6016379
AAACGGG40700.013.3218737
AACGGGA35200.013.038968
CGGGATT23650.012.93788210
GAAACGG43150.012.56547456
GGAAACG45500.011.5703245
CGGGAAT14800.09.27307110
AACGGGT9150.09.0977958
GCGTGAG30300.08.91010622
CGCCCGG11250.08.60047835
CCCTAAA43100.08.5729231
CGTGAGC30050.08.53502323
CTCGTAT6705.456968E-128.394937544
ACAGGCG41900.08.2689318
GTTGGAA79500.08.2677182
CGGGATA5006.37192E-88.09949610
ACGGGTT8150.08.0056369
CGTATGC5402.7726855E-87.916115345
GCTAGAC30800.07.816330429
Produced by FastQC (version 0.11.5)