FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8181901
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA21050.012.0640571
ACAGGCG20950.010.73853718
GATCGGA1551.9200479E-510.663991
GCGTGAG14350.010.34716122
AAACGGG23350.010.342297
AACGGGA18650.010.2141588
GGAAACG22650.010.2002285
GAAACGG23000.010.1758986
CGTGAGC14550.09.99877223
CACCGCG5100.09.99877230
ACGGGAT14150.09.858359
GCCACCG13300.09.69805728
GAGCCAC43000.09.62672426
CCCAAGT29100.09.6045881
ATAGGCG3451.4551915E-119.56404318
CCCCGAA2209.699179E-79.5623391
CGAAGAT5200.09.5360691
CCCAAAG67900.09.2947631
CCCTAAA18100.09.0491281
AACGGGT4850.08.9687938
Produced by FastQC (version 0.11.5)