FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7985668
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19550.012.2317411
CGGGATT10950.011.64150510
ACGGGAT11950.011.4203089
AACGGGA17400.011.0322758
GGAAACG22100.010.5908245
ACAGGCG19950.010.52447318
AAACGGG22150.010.4268067
GAAACGG22450.010.291926
GCGTGAG13350.010.22299222
CACCGCG4700.09.89244230
GCCACCG12250.09.6723228
GAGCCAC38550.09.41522426
CCCAAAG65900.09.3569941
CGTGAGC14650.09.21346123
CCGAGTA10600.09.0593282
CCCAAGT26600.09.046411
CCACGAA3357.730705E-108.9788991
AGGCGTG18350.08.90857720
CCACCGC9850.08.83143929
CCCGAGT16250.08.7924141
Produced by FastQC (version 0.11.5)