FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9736858
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA28200.012.3992361
ACGGGAT17900.012.0663729
AACGGGA23100.012.0123238
ATAGGCG2750.011.9994618
AAACGGG29900.011.8889757
CGGGATT17250.011.82543310
GCGTGAG15850.011.63985422
CACCGCG6050.011.40467930
GAAACGG30400.011.0522486
ACAGGCG21850.011.052134518
GCCACCG14700.010.81606128
TAGGCGT2802.7284841E-1110.71380319
GGAAACG29950.010.6687795
CGTGAGC17650.010.45278723
AACGGGT5950.010.3355648
AGGCGTG21100.010.1654220
GATCGGA4450.010.1169431
GCTAGAC15000.09.69976229
CCCAAAG80450.09.6252441
GAGCCAC51050.09.51974826
Produced by FastQC (version 0.11.5)