FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6743949
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA18500.012.5785961
ACGGGAT11950.012.0476399
AACGGGA16650.011.0787178
AAACGGG20450.010.8534317
GGAAACG20500.010.6174915
GAAACGG21250.010.4488596
CGGGATT11500.010.04133610
CGATTTA1356.910936E-410.0084044
GCGTGAG12100.09.66735822
CGTGAGC12650.09.60269423
CCCGGTC1801.0013004E-49.1746432
CCACCGC8250.08.90719129
CGTTAAA2557.62695E-78.8312721
CGTAGAA2105.6564117E-58.5789511
ACAGGCG18200.08.569618
CACCGCG4601.8189894E-128.4829330
GTTGGAA30650.08.4739252
CCCAAGT22250.08.4343611
GCCACCG11300.08.36104928
ACGGGTT3254.159483E-88.3059219
Produced by FastQC (version 0.11.5)