FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7257776
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCACCG11050.012.21548328
GCGTGAG13200.011.93014722
CGTTGGA17450.011.6236191
CACCGCG4400.011.24842430
CGTGAGC14200.011.08999523
ACGGGAT12200.010.8196479
ACAGGCG17300.010.74993918
AACGGGA15700.010.5096758
AAACGGG19700.010.2793057
CGGGATT11000.010.22724910
CCCAAGT24850.09.9760951
CCACCGT5600.09.90932629
AGGCGTG16500.09.81680720
GGAAACG19150.09.7928545
CCCAAAG58550.09.7768981
TGGCGCG1705.4202406E-59.70452318
GAAACGG19900.09.6508796
ATAGGCG2352.3733992E-79.57312718
TACAGGC45600.09.53813717
CCACCGC9300.09.51479729
Produced by FastQC (version 0.11.5)