EGAF00006071660 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006071660
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5061504
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCG	64450	1.2733369370052854	TruSeq Adapter, Index 3 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	6660	43.61524	45
TCGGAAG	7070	42.53401	2
ATCTCGT	6850	42.408405	39
CTCGTAT	6855	42.407364	41
TCTCGTA	6855	42.377472	40
ACACGTC	7015	42.370285	12
ATCGGAA	7120	42.361774	1
CGTATGC	6860	42.278057	43
CGTCTGA	7025	42.117382	15
TCGTATG	6945	41.72822	42
ACGTCTG	7080	41.694862	14
CGGAAGA	7240	41.626495	3
CACGTCT	7115	41.61707	13
CATCTCG	7020	41.44471	38
GCACACG	7220	41.352192	10
CACACGT	7370	40.418175	11
GTATGCC	7210	40.319347	44
CTTAGGC	7580	38.793056	32
AGCACAC	8045	37.279396	9
GCATCTC	7815	37.225334	37