FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7493432
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATCAG2808.04539E-912.0535633
ACGGGAT15550.011.8639919
CGTTGGA24300.011.5141291
GTCACGA3358.094503E-1011.41767129
GATCGGA2851.2766941E-711.084061
TCTCGTA3052.8525392E-811.06445741
AAACGGG24700.011.0204937
CTCGTAT3307.781637E-910.907989542
CGGGATT13700.010.83897210
AACGGGA20550.010.8379598
GAAACGG26750.010.4280876
ACACGTC4102.1409505E-99.87764513
GGAAACG26700.09.8578315
ACGATCA3909.911673E-99.80768332
CGTATGC3704.6069545E-89.72848844
AACGGGT4651.8735591E-109.6761198
ACCGCGC5900.09.53389131
ACGCCCG4051.8373612E-89.44405734
ACCACGC14200.09.19013231
CGCGCCC4905.0567905E-109.18366533
Produced by FastQC (version 0.11.5)