FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7990580
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19300.012.859511
AACGGGA17000.012.3527338
AAACGGG20950.012.0284377
CGGGATT12000.011.99867210
ACGGGAT12650.011.8574329
GAAACGG21650.011.6406196
GGAAACG23300.010.4296615
ACAGGCG20550.09.63366818
GCGTGAG15150.09.60259622
CGCTAGA1250.0041496819.59863728
CGTGAGC15800.09.58724523
CCCAAAG63400.09.34771
CCCTAAA19250.09.2203851
CCCCGAA2454.1641397E-79.2092221
CCCGTAA2957.581548E-99.1780041
CCCAAGT26300.08.6361261
GAGCCAC42050.08.488687526
CCCAACG1952.338944E-48.4850791
CGCCATA1600.00319584798.4609731
TACAGGC50300.08.28908117
Produced by FastQC (version 0.11.5)