FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6976375
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19500.015.8389391
AACGGGA17450.013.534438
AAACGGG21950.013.1167967
GAAACGG21900.012.9448516
ACGGGAT13100.012.7059329
GGAAACG23650.012.1776075
CGGGATT13300.010.82366810
CGGGAAT7950.010.4684110
ACGGGAA7500.010.1967969
CGCCCGG6000.010.12842735
GCGTGAG16200.09.71930822
AACGGGT4905.0931703E-119.6398298
CGTGAGC17700.09.53411623
ACGGGTT4304.8876245E-99.4156479
ACAGGCG24850.09.32356218
CCCAAAG77150.09.3216961
ACGCCCG3155.6489534E-69.288856534
CGTAGAA3206.7570763E-69.1586941
GCCACCG15050.08.67235128
ACCACGC11750.08.6148731
Produced by FastQC (version 0.11.5)