FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13208606
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA38150.013.2220111
AACGGGA32550.012.0961238
AAACGGG37750.011.92011457
ACGGGAT24900.011.7463559
GAAACGG38650.011.5265546
GGAAACG40700.010.9459775
CGGGATT24500.010.74431910
GCCACCG25450.09.99005428
CACCGCG8800.09.97146930
ACCGCGC8700.09.8274331
CGCCCGG11950.09.79015635
GCGTGAG30050.09.58343722
CGGGAAT14400.09.53073710
CGTGAGC31200.09.51864623
ACAGGCG41450.09.44453518
ACGCCCG6800.09.26410134
CGCGCCC7300.09.24618233
CGGCTAA12150.09.073482539
CCGCGCC10300.08.737493532
ACCACGC21450.08.6012631
Produced by FastQC (version 0.11.5)