FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9831346
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACGA850.002615435312.35246859
CGTTGGA25250.011.111821
ACAGGCG24750.010.78697218
ACGGGAT17000.010.7642949
AACGGGA22800.010.4599138
GCGTGAG18550.010.3508522
CGGGATT15550.010.32114810
CCCGATA1200.0029508410.0026181
CACCGCG7050.010.00017730
AAACGGG27750.09.891067
TAGGCGT3203.274181E-119.84292219
GGAAACG27750.09.6220365
ATAGGCG3306.184564E-119.54465218
CGTGAGC19450.09.40924223
GAAACGG28850.09.3579656
GCCACCG16400.09.32962228
GATTTCG10350.08.9858945
CCCTAAA24400.08.977761
CCCAAAG82100.08.9000161
AGGCGTG24750.08.72667220
Produced by FastQC (version 0.11.5)