FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8969011
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24450.014.1113971
AACGGGA22100.012.6239558
ACGGGAT16650.012.2968299
AAACGGG27150.011.9331827
GAAACGG28350.011.5867326
CGGGATA3358.094503E-1011.41734910
GGAAACG28700.011.2886445
CGGGATT16200.010.55503710
CCCGAAA3704.0272425E-910.3610691
ACGCCCG4905.456968E-1210.10137634
ACAGGCG29700.09.39326918
CGCCCGG8650.09.10344735
CCTTACG2250.00178832019.0202261
CGGGAAT8000.08.999557510
ACCACGC16500.08.99940731
GCCACCG17400.08.92167728
GCGTGAG20800.08.86945922
ACCGTGC7450.08.75781231
CCCGTAA3351.2024484E-58.7509641
ACTGCGC7800.08.653275531
Produced by FastQC (version 0.11.5)