FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6667718
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCC3400.014.55947133
ACCGCGC4550.013.350039531
CACCGCG4550.012.85694430
GCGGGTC1250.002255901512.5981994
CGTTGGA18900.012.1815891
CCGCGCC5050.012.02906632
ACGACCC1450.006836482310.86076131
CCGGCTA5400.010.83397838
GCCACCG13850.010.72169528
CCCGAAC1903.8743205E-410.657252
CGTGAGC16100.010.62007723
CGGGATT10000.010.34828810
AAACGGG19200.010.3107947
ACGGGAT12050.010.268019
GCGTGAG15850.010.0776522
AACGGGA15500.010.0144728
CGGCTAA5750.09.78275139
GGAAACG20850.09.7108415
ACAGGCG22050.09.69249218
CGTACAA2352.4695072E-49.6050071
Produced by FastQC (version 0.11.5)