FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10446061
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT15750.010.4753099
AACGGGA21800.010.2514328
CGTTGGA26200.010.1960831
GATCGGA2402.9856892E-810.0051451
TCGTTCG1200.00295886589.9993515
AAACGGG26650.09.8490777
CCCGAAT6500.09.6972951
ACAGGCG20500.09.43895318
ATAGGCG3401.10958354E-109.26463718
CGGGATT14700.09.18290110
GCGTGAG16900.09.05370722
GAAACGG27450.08.9609966
CCTCGTT4055.456968E-128.8934621
CGTGAGC18000.08.83377523
CCCCGAA3401.0641088E-98.828071
CCCAAAG81100.08.7344541
GGAAACG28800.08.5931925
TAGGCGT3152.4372639E-88.57165119
CGATAGA1952.3970801E-48.4658931
CCCAAGT34400.08.46365451
Produced by FastQC (version 0.11.5)