FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3456320
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA2200.017.414711
CGTCCCG2159.094947E-1216.74091335
TCTCGTA2457.094059E-1114.69100543
ACGGGAT8250.014.1790479
CGTTGGA11650.013.9282491
AAACGGG12700.013.8161967
AACGGGA10800.013.3307288
ATCGGAA2907.094059E-1113.2084782
GAAACGG13200.012.95295056
GGAAACG13550.012.8031115
TCGTATG3051.6734703E-1012.54706445
CTCGTAT2901.024091E-912.41136744
ACCCGTC3457.2759576E-1212.38888332
ACGCCCG2003.6762322E-612.37258134
CCGATCT3001.7462298E-911.99765539
CGGGATT8250.011.99765510
GTCCCGA3001.7462298E-911.99765536
CCCGATC3001.7462298E-911.99765538
TCCCGAT3153.759851E-911.42633637
CGTATGC2201.0553398E-511.25545445
Produced by FastQC (version 0.11.5)