FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7978539
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA19500.012.3100611
AACGGGA17600.011.9311988
ACGGGAT12600.011.9041429
CACCGCG4600.011.08721430
GAAACGG21800.010.802196
CGGGATT11550.010.7786610
AAACGGG22000.010.7721667
CCCCGAT2156.4479536E-810.4671311
GGAAACG21950.010.4551035
GCGTGAG14450.09.965754522
CGGGATA3401.0913936E-119.70537710
ACAGGCG19450.09.40825118
CCCAAAG64900.09.3392391
GCCACCG12350.09.23115728
CGGTTGC1300.00572710629.2306374
CGTGAGC15550.09.164371523
CGTCAAA2301.8140854E-69.1321931
CGGGAAT7750.09.09630110
CCCGAGT13400.09.068911
CCGAGTA10300.09.0306382
Produced by FastQC (version 0.11.5)