FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7907573
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCGAC600.00375912514.99843829
CGTTGGA20450.011.5343871
AACGGGA16750.011.4607688
AAACGGG21250.011.3641687
GCGTGAG14300.010.80238722
ACGGGAT12250.010.7737069
GGAAACG22400.010.38395
GAAACGG22600.010.2915516
CGGGAAT7000.010.28399410
ACAGGCG20950.010.23695118
CGTGAGC15350.09.86811723
CGGGATT12250.09.6718510
CACCGCG5150.09.6106530
GCCACCG12650.09.60319628
AACGGGT4900.09.4882088
CCCAAAG63200.09.2949661
ATAGGCG2752.4825567E-89.27117518
CACTACG2157.657345E-69.06882330
AGGCGTG19500.08.99849420
GAGCCAC38500.08.95959626
Produced by FastQC (version 0.11.5)