FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8389493
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACGGG20700.09.782087
AACGGGA15700.09.7441158
GCGTGAG15300.09.70460622
ACGGGAT13200.09.65776359
CGTTGGA19650.09.6337071
CGGGATT11750.09.57315210
CCCAAGT26950.09.4771021
CCCTATT13200.08.9916321
GCTAGAC10950.08.90293929
CGTGAGC17150.08.83265823
GAGCCAC43550.08.78185326
CCCAAAG66550.08.6915661
GAAACGG22450.08.6205386
CGATAAT3901.7826096E-108.4750741
GGAAACG22400.08.44006255
CCCTAAC9250.08.2834991
CCCATAT10550.08.1172291
ACAGGCG23900.08.09512118
CCCGAGT12450.08.0852021
CGAAGAT6400.07.98149731
Produced by FastQC (version 0.11.5)