FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15872056
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT25050.012.4535519
CGTTGGA36950.011.8462841
AACGGGA34750.010.8763548
CGGGATT24800.010.82527510
AAACGGG43550.010.469437
GAAACGG44050.010.2484516
GCGTGAG31350.010.23845422
GGAAACG43700.010.193255
CGTGAGC31950.010.09312723
ACAGGCG46250.09.59932918
CCCGAAC3901.8189894E-129.2565741
CCCAAAG137250.09.1511941
CCCAAGT58450.08.8527361
GAGCCAC87500.08.77625326
AGGCGTG41250.08.72666320
ATAGGCG5300.08.48997218
GCCACCG31800.08.39532228
CAGGCGT41800.08.10948119
GGATTAC130850.08.06931313
GGCGTGA41800.08.03771521
Produced by FastQC (version 0.11.5)