FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6737338
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1850.017.8712461
ATCGGAA2550.013.5388452
AACGGGA13350.012.1329298
ACGGGAT10250.011.9981189
CGTTGGA16050.011.9850231
CGTCTGA2900.011.37752516
CGGGATT10650.010.843369510
AAACGGG17450.010.82924657
ACACGTC3253.6379788E-1210.15225413
GAAACGG17950.010.1099096
GGAAACG17650.010.0327865
ACAGGCG15200.09.57086818
CGTAATA1300.005638759.2480581
GCGTGAG11350.09.11751322
CACCGCG5100.09.11628530
TCGGAAG3654.7293724E-119.0451833
TTAAGCG1350.0078167168.8874958
CCCTAAA16750.08.8822771
CCATCGA2557.518447E-78.8400561
CGGGAAT5650.08.75968710
Produced by FastQC (version 0.11.5)