FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9393213
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCGCG5100.012.06189730
CGTTGGA24000.011.2564031
CCCCGAT2301.3042154E-911.0932681
CCCGCGA950.00597666811.0589241
ACGGGAT14000.010.9275759
GCCACCG14950.010.73686428
GATCGGA2002.672532E-710.5059781
CGGGATT13100.010.41889710
CGTGAGC17750.010.39480223
GAGCCAC47200.010.35966626
CCCTAAA23200.010.2860241
AACGGGA20150.010.1975818
CCCAAAG80150.010.1492551
AAACGGG25350.010.1174217
CCCAAGT33600.010.0950291
CGATAAT3009.822543E-1110.0056921
GCGTGAG17100.010.00041922
ACAGGCG22250.09.84284718
GAAACGG25950.09.4789046
CCACCGC12100.09.42318629
Produced by FastQC (version 0.11.5)