FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7371688
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA16850.012.0502981
CCCGAAT4850.011.4742391
CGTGAGC14050.011.31522923
AACGGGA14350.011.2887778
GCGTGAG13400.011.08062422
ACGGGAT11450.011.0038819
ACAGGCG17450.011.0014118
CCCCGAA2607.4578566E-1110.9911771
CGCCTAA1100.001402318810.9385871
GCCACCG11250.010.665256528
AAACGGG19150.010.4173667
CGTAAGC1304.9270946E-410.38324223
CACCGCG4500.010.33196730
CGGGATT10350.010.28863310
GAAACGG19250.010.2083816
GGAAACG18900.010.0798095
GAGCCAC39050.09.83224626
CGCTAAT1552.2285634E-49.7035861
CGCTAGA1552.2929843E-49.67613928
CCCAAAG60650.09.6219881
Produced by FastQC (version 0.11.5)