FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8135515
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGATT14050.013.44238810
CGTTGGA25100.013.2472161
AACGGGA22750.013.1444898
ACGGGAT15850.013.0506469
AAACGGG26450.013.0058627
GAAACGG28250.012.0974336
GGAAACG28900.011.4974075
CGGGAAT10150.09.74675610
GCCACCG16750.09.39814428
GATTTCG11850.09.3466965
CCGCGCC5851.8189894E-129.22601732
CGTGAGC20400.08.70741123
ATTTCGT14850.08.6301136
ACCGCGC5555.9117156E-108.50902631
GCGTGAG19200.08.43175622
AACGGGT4601.4599027E-78.3093028
CGGCCTA3258.2988576E-58.30224139
CCGGCTA7253.6379788E-128.06367138
ACAGGCG26900.08.02407618
CGCCCGG7303.6379788E-128.00829335
Produced by FastQC (version 0.11.5)