FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12781278
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4850.019.01943445
CTCGTAT6050.014.87563141
TCTCGTA7000.013.17883540
CGTTGGA34950.012.4420811
ACGGGAT23750.012.4098039
CGTATGC7850.012.32388243
AACGGGA31250.012.0232998
CCGAGCG1506.4324425E-412.0054072
AAACGGG38000.011.4856347
CGGGATT23450.011.32130110
TCGTATG8600.011.24908142
GAAACGG38650.011.0596396
GGAAACG40900.010.3961755
ATCTCGT9300.010.16185139
ACACGTC10050.09.85017312
GCGTGAG28750.09.62511322
CGTCTGA10500.09.4275815
CGGCTAA13400.09.23558439
CGTGAGC30300.09.13273823
TCGGAAG10850.09.1285342
Produced by FastQC (version 0.11.5)