FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8038590
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA25100.013.4633851
AACGGGA22250.013.144768
ACGGGAT16550.012.91404159
CGTCCGA1250.002248922612.6034496
CGGGATT14750.012.35462510
AAACGGG26050.012.3507867
GAAACGG27850.011.5561266
GGAAACG29050.010.8464095
CGCCCGG8250.010.63530535
CCCGATT3653.270543E-910.4928321
CGACAAT1800.002926044610.0127691
ACGCCCG4458.772986E-99.10021834
ACCGCGC5852.0008883E-118.84527331
CACCGCG6553.6379788E-128.58687930
ACAGGCG26600.08.54328518
GATTTCG10300.08.5218035
CGGGAAT8650.08.3228210
CGGGATA4355.5000055E-78.27498610
CCCGGGT12100.08.1922651
GTTGGAA48000.08.158942
Produced by FastQC (version 0.11.5)