FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6157209
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA2600.017.9210681
ATCGGAA3250.015.6975892
CGTCTGA3750.013.99732116
TCGGAAG3800.013.0307023
ACGTCTG4000.012.7475615
ACACGTC4000.012.37263113
ATAGGCG1901.0486474E-811.83983918
CGTTGGA13800.011.65413951
GCACACG4600.011.41085911
AACGGGA11050.010.9933718
CGGGATT8550.010.87511210
ACGGGAT8800.010.7365819
AAACGGG14350.010.5554717
CACGTCT4850.010.51345314
ACAGGCG17650.09.9414418
CCCAAGT19000.09.88853551
GCGTGAG11550.09.8682422
GAAACGG15200.09.8675756
CCCAAAG50000.09.7097491
TAGGCGT1705.4229306E-59.70402419
Produced by FastQC (version 0.11.5)