FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7787644
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACGT1209.7659366E-514.9995934
CGTTGGA24550.013.7848771
CCGTACG1607.833922E-512.65614933
AAACGGG25000.012.2379367
ACGGGAT15350.012.1655589
GAAACGG26050.011.7445876
AACGGGA20200.011.47135458
CCCGAAA3451.2587407E-911.1171371
CGGGATT14350.010.97538110
GGAAACG27850.010.6624085
CACCGCG6050.010.04111330
AACGGGT5600.09.6416658
CGCGCCC4001.4995749E-89.56242433
CGGGATA4001.4997568E-89.56230110
CCTCGAT3104.4720055E-69.4611691
CTCGTAT2150.00120721969.41737944
ACCGCGC6053.6379788E-128.92554931
CCGCGCC6501.8189894E-128.65377632
ACTGCGC6653.6379788E-128.45857931
CCCGAAG4551.1587508E-78.4294771
Produced by FastQC (version 0.11.5)