FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7357772
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA23650.013.2597271
ACGGGAT15000.013.0498479
CGGGATT13500.012.50010810
AAACGGG25350.012.3350367
AACGGGA21700.012.2332158
GAAACGG25800.012.2065036
ACGCCCG4650.011.6125334
GGAAACG27400.011.0832255
CGCCCGG9150.010.81822135
TACGCCC1500.00878364210.50016233
CCGGCTA8800.010.48176238
CGGCTAA9200.09.537024539
CGGGAAT8500.09.00007710
GCCCGGC20000.08.99928236
ACCGCGC5556.184564E-118.91905631
CGCGCCC4203.218356E-78.57156133
CCCCGAT2400.00319832598.460231
CCTGACG3206.658488E-58.460231
TGCGCCC5101.0009899E-88.38248333
ACAGGCG28050.08.34061718
Produced by FastQC (version 0.11.5)