FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6456973
Sequences flagged as poor quality0
Sequence length36
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT8750.012.5137659
CGGGATT8050.011.73864310
AACGGGA12550.011.1150768
AAACGGG15900.010.3769277
CGTTGGA16750.010.1376691
GGAAACG16700.09.9719635
GAAACGG16900.09.9434956
CGATATA1250.00408338069.6173281
CCCAAAG45500.08.8511111
GCGTGAG12550.08.84336422
CGTCTAA1550.00241842218.7253981
CGTGAGC13500.08.66543423
TAGGCGT2601.0235417E-68.65261619
CGTTAAA3152.3635948E-88.58691
CCCAAGT20250.08.4596861
GAGCCAC30450.08.42244726
ATAGGCG2854.223948E-78.41985518
CCCTAAT8850.08.3200741
CCCTAGT5100.08.2501581
GCTAGAC8400.08.21311829
Produced by FastQC (version 0.11.5)