FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11671408
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA35550.014.3267831
AAACGGG37200.012.3378897
AACGGGA30900.012.0147428
CGGGATT21350.011.69806710
GAAACGG39050.011.5805366
AACGGGT7800.011.5386328
ACGGGAT23850.011.132249
GGAAACG42450.010.7066435
ACGGGTT7300.010.1713849
CGGGAAT12100.010.041471510
CCACGAT5151.2914825E-109.1895011
CCCCGAA5201.5643309E-109.101141
GGCGTAA2555.781597E-48.82271621
CGAGAAT5709.567884E-108.3027941
ACGCCCG5709.877112E-108.28927734
GCCACCG25950.08.23630528
ACCGCGC9350.08.18134431
GTTGGAA69400.08.1096162
CACCGCG9450.08.09483830
CCCCGAC5606.022674E-98.0486271
Produced by FastQC (version 0.11.5)