EGAF00006071900 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006071900
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6508763
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG	58018	0.8913828941075286	TruSeq Adapter, Index 19 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	6695	43.026527	1
AACGATC	6835	42.45162	38
TCTCGTA	6860	42.361187	43
CTCGTAT	6875	42.236046	44
TCGTATG	6900	42.22866	45
GTCACGT	6960	41.881813	29
ATCTCGT	6930	41.835926	42
AGTCACG	6980	41.729584	28
TCGGAAG	6925	41.70722	3
ATCGGAA	6920	41.704773	2
CGGAAGA	7085	41.40181	4
ACACGTC	7145	41.364025	13
CGTCTGA	7150	41.209274	16
AAACGAT	7100	40.93051	37
ACGTGAA	7190	40.797962	32
ACGATCT	7110	40.71477	39
CGTGAAA	7190	40.7041	33
ACGTCTG	7260	40.61587	15
TCACGTG	7190	40.453808	30
CACGTGA	7235	40.388744	31