FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8024026
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22150.012.8039661
AAACGGG22850.012.1112987
GAAACGG23250.011.9028576
AACGGGA19100.011.7805478
ACGGGAT15150.011.5845219
GGAAACG24900.011.2051715
CGGGATT13750.010.96432110
AACGGGT4950.010.4549378
CCCCGGT3206.4933374E-79.8474951
CCCTACG1900.0046090029.4772881
CCCGAAA2851.7515553E-59.4772881
CGCCCGG7550.09.23841235
CCCTAGA16750.08.7346651
CGGGATA3104.7345362E-58.71022210
CCGGCTA7350.08.26530738
CCCGGAT2750.00121785938.1849311
ACGCCCG3857.994648E-68.18141134
GATTTCG10200.08.162025
CCCGAAT7850.08.0285311
CGTTAAT2900.00205597337.76157241
Produced by FastQC (version 0.11.5)