FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7876728
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24250.013.104741
AAACGGG24700.012.749447
ACGGGAT15850.012.6303469
AACGGGA20000.012.3713538
GAAACGG26000.011.5089276
CGTGAGC20400.011.02903223
GCGTGAG19600.011.0176522
ACAGGCG26800.010.91137918
CGGGATT14850.010.90587610
GCCACCG17550.010.77029628
GGAAACG27950.010.7062515
ACTACGC2151.0411666E-410.46329531
AGGCGTG25100.010.3955420
CAGGCGT23550.010.12459719
ACGCCCG4702.1827873E-1110.05731634
CGCCCGG8850.09.91925935
CCCCGAA3351.1915326E-69.4189891
GGCGTGA24250.09.36855121
CCCAAAG91600.09.0054751
CCGCACC7000.09.00397832
Produced by FastQC (version 0.11.5)