FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5925924
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA17850.014.0959351
ACGGGAT12600.013.7374089
CGCGCCC2754.474714E-1013.07892233
CCCCGAT2602.390152E-913.077571
AAACGGG20600.012.8765487
AACGGGA17050.012.7888648
GAAACGG21350.012.6366026
GGAAACG21650.012.348115
CGGGATT11250.011.98901110
CGCCCGG5950.011.7131435
CCGGCTA5700.011.43804438
CGGCTAA6300.011.06240939
CCCCGTA1852.824574E-411.0275731
CGGGATA2952.1637061E-710.66818810
CCCGAAA3401.1023076E-810.6671941
CGACAAC1500.00831350610.57831
CCGGATT1750.002209201710.357572
GCGCCCG3755.287802E-910.190659534
AACGGGT4905.456968E-1210.092798
ACGCCCG3351.1429256E-710.06540134
Produced by FastQC (version 0.11.5)