FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7932565
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24600.013.5630061
AAACGGG25150.013.3259837
AACGGGA20650.012.6351598
ACGGGAT14350.012.5395189
GAAACGG26250.012.4279416
ACGGGTT5200.012.1114879
GGAAACG27150.012.0990625
AACGGGT5950.012.0969478
CGGGATT14600.010.78420110
ACGCCCG4900.010.56608534
CGCGCCC3908.931238E-1010.38926333
ACAGGCG29100.010.12599118
GCGTGAG19800.010.11082922
ACCACGC14350.09.71910831
CGTGAGC20900.09.47314523
CCCAAAG89400.09.2293881
CGCCCGG8800.09.20883935
GCCCGGC17550.09.10681236
GAGCCAC55500.09.04122226
CCATCGA3502.1530614E-69.0175671
Produced by FastQC (version 0.11.5)