FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6638483
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA15850.012.5103271
AAACGGG17750.011.1514217
ACGGGAT10500.011.1393529
GGAAACG17800.010.9668915
GAAACGG18450.010.7313226
AACGGGA14550.010.7182778
CCCGTAA2301.5188562E-810.4499971
CGTGAGC12450.09.8764123
GCGTGAG12050.09.7064922
CCCGTAT1409.6206064E-49.653932
ACAGGCG17750.09.63077318
CGGGATT10800.09.58031810
GAGCCAC32450.09.38078726
CCCAAAG52000.09.215341
CCCGAGT11200.08.7180491
AGGCGTG15350.08.59664320
CCCAAGT21850.08.5937471
CCCAAAA25050.08.275521
CCGAGTA8350.08.2729622
TACAGGC42050.08.20193817
Produced by FastQC (version 0.11.5)