FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006072010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006072010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10851507
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4950.017.72555745
CTCGTAT5200.015.57634841
TCTCGTA5100.015.44060640
CGTTGGA34650.013.1389821
CGTATGC6200.013.06337243
AACGGGA29200.012.8687448
AAACGGG33550.012.6073517
TCGTATG6800.012.24157542
ACGGGAT23900.011.9566189
GAAACGG35750.011.76857956
CGGGATT21350.011.593039510
GGAAACG37250.011.4158455
ATCTCGT7150.011.01363139
CGGGAAT11900.09.45421710
CCCGTAA4407.012204E-99.2200531
ACGCTAG2453.876371E-49.18295527
ACACGTC9600.09.14079412
CGGGATA4854.0690793E-98.81483810
ATCGGAA9150.08.6210581
CGTCTGA10000.08.54909415
Produced by FastQC (version 0.11.5)